FitchParsimony
public interface ParsimonyCriterion
Modifier and Type | Method | Description |
---|---|---|
double |
getScore(Tree tree) |
Calculates the minimum number of steps for the parsimony reconstruction for the given tree.
|
double[] |
getSiteScores(Tree tree) |
Calculates the minimum number of steps for the parsimony reconstruction for the given tree.
|
State[] |
getStates(Tree tree,
Node node) |
Returns the reconstructed character states for a given node in the tree.
|
double[] getSiteScores(Tree tree)
tree
- a tree object to reconstruct the characters ondouble getScore(Tree tree)
tree
- a tree object to reconstruct the characters onhttp://code.google.com/p/jebl2/