Package | Description |
---|---|
jebl.evolution.graphs | |
jebl.evolution.trees |
Modifier and Type | Method | Description |
---|---|---|
static int |
Graph.Utils.getDegree(Graph graph,
Node node) |
|
boolean |
Utils.isAcyclical(Graph graph) |
|
boolean |
Utils.isConnected(Graph graph) |
|
boolean |
Utils.isTree(Graph graph) |
Modifier and Type | Interface | Description |
---|---|---|
interface |
RootedTree |
A tree with a root (node with maximum height).
|
interface |
Tree |
A rooted or unrooted tree.
|
Modifier and Type | Class | Description |
---|---|---|
class |
CompactRootedTree |
A memory efficient rooted tree.
|
class |
FilteredRootedTree |
|
class |
MutableRootedTree |
A simple rooted tree providing some ability to manipulate the tree.
|
class |
ReRootedTree |
|
class |
RootedFromUnrooted |
Root an unrooted tree.
|
class |
RootedSubtree |
A simple, immutable rooted tree implementation that is a subtree of an existing tree
subtending a specified set of taxa..
|
class |
SimpleRootedTree |
A simple, and initially immutable rooted tree implementation.
|
class |
SimpleTree |
A basic implementation on an unrooted tree.
|
class |
SortedRootedTree |
|
class |
TransformedRootedTree |
This RootedTree class wraps another RootedTree and transforms
the branch lengths and node heights using various functions.
|
http://code.google.com/p/jebl2/