public final class AminoAcids
extends java.lang.Object
Modifier and Type | Method | Description |
---|---|---|
static int |
getCanonicalStateCount() |
|
static java.util.List<State> |
getCanonicalStates() |
|
static AminoAcidState |
getGapState() |
|
static AminoAcidState |
getState(char code) |
|
static AminoAcidState |
getState(int index) |
|
static AminoAcidState |
getState(java.lang.String code) |
|
static int |
getStateCount() |
|
static java.util.List<AminoAcidState> |
getStates() |
|
static java.lang.String |
getTripletCode(AminoAcidState state) |
|
static AminoAcidState |
getUnknownState() |
|
static boolean |
isGap(AminoAcidState state) |
|
static boolean |
isUnknown(AminoAcidState state) |
|
static AminoAcidState[] |
toStateArray(byte[] indexArray) |
|
static AminoAcidState[] |
toStateArray(java.lang.String sequenceString) |
public static final java.lang.String NAME
public static final int CANONICAL_STATE_COUNT
public static final int STATE_COUNT
public static final AminoAcidState A_STATE
public static final AminoAcidState C_STATE
public static final AminoAcidState D_STATE
public static final AminoAcidState E_STATE
public static final AminoAcidState F_STATE
public static final AminoAcidState G_STATE
public static final AminoAcidState H_STATE
public static final AminoAcidState I_STATE
public static final AminoAcidState K_STATE
public static final AminoAcidState L_STATE
public static final AminoAcidState M_STATE
public static final AminoAcidState N_STATE
public static final AminoAcidState P_STATE
public static final AminoAcidState Q_STATE
public static final AminoAcidState R_STATE
public static final AminoAcidState S_STATE
public static final AminoAcidState T_STATE
public static final AminoAcidState V_STATE
public static final AminoAcidState W_STATE
public static final AminoAcidState Y_STATE
public static final AminoAcidState U_STATE
public static final AminoAcidState O_STATE
@Deprecated public static final AminoAcidState[] CANONICAL_STATES
public static final AminoAcidState B_STATE
public static final AminoAcidState Z_STATE
public static final AminoAcidState J_STATE
public static final AminoAcidState X_STATE
public static final AminoAcidState UNKNOWN_STATE
public static final AminoAcidState STOP_STATE
public static final AminoAcidState GAP_STATE
@Deprecated public static final AminoAcidState[] STATES
public static final StateClassification CHEMICAL_CLASSIFICATION
public static final StateClassification HYDROPATHY_CLASSIFICATION
public static final StateClassification VOLUME_CLASSIFICATION
public static int getStateCount()
public static java.util.List<AminoAcidState> getStates()
public static int getCanonicalStateCount()
public static java.util.List<State> getCanonicalStates()
public static AminoAcidState getState(char code)
public static AminoAcidState getState(java.lang.String code)
public static AminoAcidState getState(int index)
public static AminoAcidState getUnknownState()
public static AminoAcidState getGapState()
public static boolean isUnknown(AminoAcidState state)
public static boolean isGap(AminoAcidState state)
public static java.lang.String getTripletCode(AminoAcidState state)
public static AminoAcidState[] toStateArray(java.lang.String sequenceString)
public static AminoAcidState[] toStateArray(byte[] indexArray)
http://code.google.com/p/jebl2/