Package | Description |
---|---|
jebl.evolution.align.scores |
Modifier and Type | Class | Description |
---|---|---|
class |
AminoAcidScores |
|
class |
Blosum45 |
|
class |
Blosum50 |
|
class |
Blosum55 |
|
class |
Blosum60 |
|
class |
Blosum62 |
|
class |
Blosum65 |
|
class |
Blosum70 |
|
class |
Blosum75 |
|
class |
Blosum80 |
|
class |
Blosum85 |
|
class |
Blosum90 |
|
class |
Hamming |
|
class |
JukesCantor |
Jukes Cantor assumes equal substitution frequencies and equal nucleotide
equilibrium frequencies.
|
class |
NucleotideScores |
|
class |
Pam100 |
|
class |
Pam110 |
|
class |
Pam120 |
|
class |
Pam130 |
|
class |
Pam140 |
|
class |
Pam150 |
|
class |
Pam160 |
|
class |
Pam170 |
|
class |
Pam180 |
|
class |
Pam190 |
|
class |
Pam200 |
|
class |
Pam210 |
|
class |
Pam220 |
|
class |
Pam230 |
|
class |
Pam240 |
|
class |
Pam250 |
|
class |
Scores |
Base class for all score matrices in the package.
|
class |
SubstScoreMatrix |
Modifier and Type | Method | Description |
---|---|---|
static Scores |
Scores.forMatrix(ScoreMatrix scoreMatrix) |
http://code.google.com/p/jebl2/