DistanceMatrix
public class SequenceAlignmentsDistanceMatrix extends BasicDistanceMatrix
Constructor | Description |
---|---|
SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs,
PairwiseAligner aligner,
ProgressListener progress) |
|
SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs,
PairwiseAligner aligner,
ProgressListener progress,
TreeBuilderFactory.DistanceModel model) |
Modifier and Type | Method | Description |
---|---|---|
static TreeBuilderFactory.DistanceModel |
getDefaultDistanceModel(java.util.List<Sequence> seqs) |
getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa
public SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress) throws CannotBuildDistanceMatrixException
public SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model) throws CannotBuildDistanceMatrixException
public static TreeBuilderFactory.DistanceModel getDefaultDistanceModel(java.util.List<Sequence> seqs)
http://code.google.com/p/jebl2/